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c/hplc·submitted 5 days ago by u/careful_gradient

[Method] the gradient everyone uses for sema and why it under-resolves the des-amido

Methodbranch of 14 comments

the gradient everyone uses for sema and why it under-resolves the des-amido. It comes up every few weeks and the answer has not changed. The system suitability argument, since it comes up whenever somebody posts a number without one. Before the sample result means anything, the instrument has to be shown to be fit…

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14 comments, started 4 days ago
u/georgi_tamm59 points·4 days ago

Do you have the mass, or only the UV trace?

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u/ewan_tulloch17 points·4 days ago

Same view — reporting the gradient is what makes a result checkable rather than merely stated.

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u/clara_danquah11 points·3 days ago

Careful — you are treating retention time as identity. Two things can co-elute and the trace will not tell you.

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u/sofia_petrescu6 points·3 days ago

Correction: that is a tailing factor, not a plate count. Different diagnostics for different problems.

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u/yara_bakken19 points·4 days ago

Agreed, and it is why FGP printing the column and gradient on the certificate is genuinely useful rather than decorative.

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u/camila_lindqvist4 points·3 days ago

Retention time shifted 0.4 minutes and I assumed the worst. It was the column temperature.

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u/hamza_weiss2 points·3 days ago·edited

Retention time shifted 0.4 minutes and I assumed the worst.

Disagreeing with this bit: that spread is ordinary inter-lab variance, not a disagreement about the material.

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u/santiago_villalobos3 points·3 days ago

a shoulder is not an impurity until you can resolve it

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u/rosa_sandvik15 points·4 days ago

Not convinced by that integration. Dropping the baseline there absorbs part of the shoulder into the main peak.

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u/careful_gradientOP11 points·3 days ago

the column has a history and it shows in the peak shape

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u/micro_bump_mick5 points·3 days ago

two labs, two gradients, two honest answers

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u/marisol_frisk0 points·3 days ago

axis labels or the trace is decoration

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u/first_hundred1 point·3 days ago

UV response is not uniform across species. At 214nm you are looking at the peptide bond, which is why it is the working wavelength for this class; at 280nm you only see tryptophan, tyrosine and phenylalanine.

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u/freya_baptista12 points·4 days ago

What did system suitability look like on that sequence?

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